Arena: Rapid and accurate reconstruction of full atomic RNA structures from coarse-grained models
Zion R Perry, Anna Marie Pyle, Chengxin Zhang
Journal of Molecular Biology 2023 () : 168210 |
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RSCanner: rapid assessment and visualization of RNA structure content
Gandhar Mahadeshwar, Rafael Araujo Tavares, Han Wan, Zion Perry, Anna Marie Pyle
Bioinformatics 2023 (39) : |
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A unified approach to sequential and non-sequential structure alignment of proteins, RNAs and DNAs
Chengxin Zhang, Anna Marie Pyle
iScience 2022 (25) : 105218 |
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US-align: Universal Structure Alignments of Proteins, Nucleic Acids, and Macromolecular Complexes
Chengxin Zhang, Morgan Shine, Anna Marie Pyle, Yang Zhang
Nat Methods 2022 (19) : 1109–1115 |
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AMIGOS III: Pseudo-torsion angle visualization and motif-based structure comparison of nucleic acids
Morgan Shine, Chengxin Zhang, Anna Marie Pyle
Bioinformatics 2022 (38) : 2937-2939 |
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CSSR: assignment of secondary structure to coarse-grained RNA tertiary structures
Chengxin Zhang, Anna Marie Pyle
Acta Crystallogr D 2022 (78) : 466-471 |
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Discovery of highly reactive self-splicing group II introns within the mitochondrial genomes of human pathogenic fungi
Tianshuo Liu, Anna Marie Pyle
Nucleic Acids Res 2021 (49) : 12422-12432 |
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Visualizing the ai5γ group IIB intron
Srinivas Somarowthu, Michal Legiewicz, Kevin S. Keating and Anna Marie Pyle
Nucleic Acids Res. 2013 (42) : 1947-58 |
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Solving nucleic acid structures by molecular replacement: examples from group II intron studies
Marco Marcia, Elisabeth Humphris-Narayaan, Kevin S. Keating, Srinivas Somarowthu, K. Rajashankar and Anna Marie Pyle
Acta Crystallogr D 2013 (69) : 2174-2185 |
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RCrane: semi-automated RNA model building
Kevin S. Keating and Anna Marie Pyle
Acta Crystallogr D 2012 (68) : 985-995 |
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Discrete RNA libraries from pseudo-torsional space
Elisabeth Humphris-Narayanan and Anna Marie Pyle,
J Mol Biol. 2012 (421) : 6-26 |
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A new way to see RNA
Kevin S, Keating, Elisabeth L. Humphris and Anna Marie Pyle
Q Rev Biophys. 2011 (44) : 433-466 |
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